1. What is scGaTE?

scGaTE is a database to systematically predict the effects of single nucleotide polymorphisms (SNPs) on transcriptional regulation across all gastric cell types.


In scGaTE, users can:


1. Browse or search eQTLs and eGenes in different gastric cell type and Bulk101;

2. Explore the cell composition GWAS, cell type-specific co-localization and TWAS based on scRNA-seq data;

3. Download all results and figures for further interactive analysis.

2. Cell type annotation.
3. Data Summary.
4. The QTL violin plot.